Distinguished Research Professor
Director, Institute of Bioinformatics
Ph.D. (1995) Indiana University

Contact Info

107C Paul D. Coverdell Center

Research Interests 

How do eukaryotic genomes evolve? Our lab is interested in parasite genomics and the biology of genome evolution. The genomes of parasitic eukaryotes are often highly-reduced, devoid of recognizable mobile elements and riddled with intracellular and lateral gene transfers. Our approach is to apply molecular, computational and phylogenetic tools to the analysis of complete parasite genomes. Projects include the development of tools for data integration, data mining, comparative genomics and the systems biology of host-pathogen interactions. Research focuses on Toxoplasma gondii, as well several species of Cryptosporidium and Plasmodium. Researchers in our group work at the bench, at the computer, or both.


  • Distinguished Research Professor, University of Georgia, 2017
  • Richard F. Reiff Internationalization Award, University of Georgia, 2016
  • SEC Academic Leadership Development Program Fellow, 2015-2016
  • Faculty Excellence in Diversity Award, University of Georgia, 2013
  • Creative Research Medal, University of Georgia, 2009
  • National Associate, National Research Council, National Academies of Science, 2008
  • Young Investigator Award, 7th International Congress on Toxoplasmosis, 2004

Grant Support 

  • “The Eukaryotic Pathogen Bioinformatics Resource Center,” NIH/NIAID
  • "Ensuring Access and Appropriate/Effective Use of Clinical & Epidemiological Datasets for Enteric Pathogens," Bill & Melinda Gates Foundation
  • “THIRM, Thwarting Influenza with RNA-powered Modulators" DARPA
  • "Cost-effective community access to integrated information for microbial eukaryotic pathogen research", Wellcome Trust 


  • Editor, Microbial Genomics (2015 - present)
  • Member, Editorial Board of Academic Editors, PeerJ (2012 – present)
  • Deputy Section Editor, BMC Genomics Eukaryotic Microbes and Viruses Section (2012 – 2013)
  • Associate Editor, BMC Genomics (2009 – 2012)
Research Interests:

Systems biology of host-pathogen interactions, Genome evolution in eukaryotic parasites, Databases, Ontologies, Data mining and Data integration of 'omics (genome, transcriptome, proteome, metabolome, lipidome), clinical, immunological, epidemiological and experimental metadata.  

Selected Publications:
  • Cordy RJ, Patrapuvich R, Lili LN, Cabrera-Mora M, Chien J-T, Tharp GK, Khadka M, Meyer EVS, Lapp SA, Joyner CJ, Garcia A, Banton S, Tran V, Luvira V, Rungin S, Saeseu T, Rachaphaew N, Pakala S, DeBarry JD, MaHPIC Consortium, Kissinger JC, Ortland EA, Bosinger SE, Barnwell JW, Jones DP, Uppal K, Li S, Sattabongkot J, Moreno A, Galinski MR.  Distinct amino acid and lipid perturbations characterize acute versus chronic malaria JCI Insight 2019;4(9):e125156    doi.org/10.1172/jci.insight.125156

  • Jessica C. Kissinger. Evolution of Cryptosporidium. News & Views. (2019) Nature Microbiology.  https://doi.org/10.1038/s41564-019-0438-1

  • Warrenfeltz S, Basenko EY, Crouch K, Harb OS, Kissinger JC, Roos DS, Shanmugasundram A,  and Silva-Franco F. EuPathDB: The Eukaryotic Pathogen Genomics Database Resource. 2018. Methods Mol Biol. 2018;1757:69-113. doi: 10.1007/978-1-4939-7737-6_5.

  • Evelina Y. Basenko *, Jane A. Pulman, Achchuthan Shanmugasundram,
    Omar S. Harb, Kathryn Crouch, David Starns, Susanne Warrenfeltz, Cristina
    Aurrecoechea, Christian J. Stoeckert Jr., Jessica C. Kissinger, David S.
    Roos, Christiane Hertz-Fowler. FungiDB: An integrated bioinformatic resource for fungi and oomycetes. 2018. Journal of Fungi 2018, 4(1), 39; doi:10.3390/jof4010039   

  • Rodrigo P. Baptista, João Luis R. Cunha, Jeremy DeBarry, Egler Chiari, Jessica C. Kissinger, Daniella C. Bartholomeu and Andréa M. Macedo. Assembly of highly-repetitive genomes using short reads: The genome of DTU III Trypanosoma cruzi strain 231, 2018 Microb Genom. 2018 Feb 14. doi: 10.1099/mgen.0.000156

  • Jessica C. Kissinger, Karen E. Hermetz, Keith M. Woodsd, Steve J. Upton. Enrichment of Cryptosporidium parvum from in vitro culture as measured by total RNA and subsequent sequence analysis. 2018 Mol Biochem Parasitol.  doi: 10.1016/j.molbiopara.2017.12.004115        

  • Animesh Dhara, Rodrigo de Paula Baptista, Jessica C. Kissinger, E. Charles Snow and Anthony P. Sinai, Ablation of an OTU-family deubiquitinase exposed the underlying regulation governing the plasticity of cell cycle progression in Toxoplasma gondii 2017 mBio 8:e01846-17

  • John Brestelli, Francislon S. Oliveira, Shon Cade, Jie Zheng, John Iodice, Steve Fischer, Cristina Aurrecoechea, Jessica C. Kissinger, Brian P. Brunk, Christian J. Stoeckert Jr., Gabriel R. Fernandes, David S. Roos, Daniel P. Beiting. MicrobiomeDB: a systems biology platform for integrating, mining and analyzing microbiome experiments. BioRxiv  and Nov 2017 Nucleic Acids Research, gkx1027

  • Elizabeth D. Trippe, Jacob B. Aguilar, Yi H. Yan, Mustafa V. Nural, Jessica A. Brady, Mehdi Assefi, Saeid Safaei, Mehdi Allahyari, Seyedamin Pouriyeh, Mary R. Galinski, Jessica C. Kissinger, Juan B. Gutierrez. A Vision for Health Informatics: Introducing the SKED Framework. An Extensible Architecture for Scientific Knowledge Extraction from Data. 2017 arXiv

  • Yan Tang, Chester J. Joyner, Monica Cabrera-Mora, Celia L. Saney, Stacey A. Lapp, Mustafa V. Nural, Suman B. Pakala, Jeremy D. DeBarry, Stephanie Soderberg, the MaHPIC Consortium, Jessica C. Kissinger, Tracey J. Lamb, Mary R. Galinski and Mark P. Styczynski.  Integrative analysis associates monocytes with insufficient erythropoiesis during acute Plasmodium cynomolgi malaria in rhesus macaques. Malar J. 2017 Sep 22;16(1):384. doi: 10.1186/s12936-017-2029-z

  • S. A. Lapp, J-T. Chien, S. Pakala, J.A. Geraldo, G. Batugedara, F. Ay, J. Humphrey, J.D. DeBarry, K.G.  Le Roch, M.R. Galinski and J.C. Kissinger. PacBio assembly of a Plasmodium knowlesi genome sequence with Hi-C correction and manual annotation of the SICAvar gene family Parasitology. 2017 Jul 19:1-14. doi: 10.1017/S0031182017001329

  • Nathan M. Chasen, Beejan Asady, Leandro Lemgruber; Rossiane C. Vommaro, Jessica C. Kissinger, Isabelle Coppens, and Silvia N.J. Moreno.  A GPI-anchored Carbonic Anhydrase-Related Protein of Toxoplasma gondii is Important for Rhoptry Biogenesis and Virulence. 2017. mSphere. 2017 May 17;2(3). pii: e00027-17. doi: 10.1128/mSphere.00027-17

  • Ousman Mahmud and Jessica C. Kissinger. Evolution of the Apicomplexan Sugar Transporter Gene Family Repertoire, International Journal of Genomics, vol. 2017, Article ID 1707231.  2017. doi:10.1155/2017/1707231
  • Cristina Aurrecoechea; Ana Barreto; Evelina Y. Basenko; John Brestelli; Brian P. Brunk; Shon Cade; Kathryn Crouch; Ryan Doherty; Dave Falke; Steve Fischer; Bindu Gajria; Omar S. Harb; Mark Heiges; Christiane Hertz-Fowler; Sufen Hu; John Iodice; Jessica C. Kissinger; Cris Lawrence; Wei Li; Deborah F. Pinney; Jane A. Pulman; David S. Roos; Achchuthan Shanmugasundram; Fatima Silva-Franco; Sascha Steinbiss; Christian J. Stoeckert Jr; Drew Spruill; Haiming Wang; Susanne Warrenfeltz; Jie Zheng. EuPathDB: the eukaryotic pathogen genomics database resource Nucleic Acids Research. 2017 doi: 10.1093/nar/gkw1105

  • Ifeonu OO, Chibucos MC, Orvis J, Su Q, Elwin K, Guo F, Zhang H, Xiao L, Sun M, Chalmers RM, Fraser CM, Zhu G, Kissinger JC, Widmer G, Silva JC. Annotated draft genome sequences of three species of Cryptosporidium: Cryptosporidium meleagridis isolate UKMEL1, C. baileyi isolate TAMU-09Q1 and C. hominis isolates TU502_2012 and UKH1. Pathog Dis. 2016 Oct;74(7)  doi: 10.1093/femspd/ftw080

  • Olukemi O. Ifeonu, Raphael Simon, Sharon M. Tennant, Abhineet S. Sheoran, Maria C. Daly, Victor Felix, Jessica C. Kissinger, Giovanni Widmer, Myron M. Levine, Saul Tzipori and Joana C. Silva. Cryptosporidium hominis Gene Catalog: a resource for the selection of novel Cryptosporidium vaccine candidates. Database (2016) doi: 10.1093/database/baw137

  • Chester J. Joyner, Alberto Moreno, Esmeralda V.S. Meyer, Monica Cabrera-Mora, the MaHPIC  Consortium, Jessica C. Kissinger, John W. Barnwell and Mary R. Galinski. Plasmodium cynomolgi infections in rhesus macaques display clinical and parasitological features pertinent to modeling vivax malaria pathology and relapse infections. Malaria Journal 2016 Sep 2;15(1):451.

  • Jung-Ting Chien, Suman Pakala, Juliana A. Geraldo, Stacey A. Lapp, Jay C. Humphrey, John W. Barnwell, Jessica C. Kissinger and Mary R Galinski. A High-Quality Genome Assembly and Annotation for Plasmodium coatneyi Generated Using Single Molecule Real-Time PacBio Technology. (2016) In Genome Announcements  2016 Sep 1;4(5). pii: e00883-16. doi: 10.1128/genomeA.00883-16.

  • Jessica C. Kissinger. An unsettling picture emerges from population genomic studies of Plasmodium vivax. Nature Genetics 48(8):825-826 (2016) doi:10.1038/ng.3630

  • Nyasa RB, Kimbi HK, Zofou D, DeBarry JD, Kissinger JC, Titanji VP. An evolutionary approach to identify potentially protective B cell epitopes involved in naturally acquired immunity to malaria and the role of EBA-175 in protection amongst denizens of Bolifamba, Cameroon. Malar J. 2016 May 20;15(1):281. doi: 10.1186/s12936-016-1337-z

  • Staffan Bensch, Björn Canbäck, Jeremy D. DeBarry, Thomas Johansson, Olof Hellgren, Jessica C. Kissinger, Vaidas Palinauskas, Elin Videvall and Gediminas Valkiūnas. The genome of Haemoproteus tartakovskyi and its relationship to human malaria parasites. Genome Biology & Evolution, 2016 doi:10.1093/gbe/evw081

  • Hernan Lorenzi, Asis Khan, Michael Behnke, Sivaranjani Namasivayam, L Swapna, Michalis Hadjithomas, Svetlana Karamycheva, Deborah Pinney, B Brunk, James Ajioka, Daniel Ajzenberg, John Boothroyd, Jon Boyle, Marie-Laure Dardé, Maria Alejandra Diaz-Miranda, J Dubey, H Fritz, SOLANGE Gennari, Brian Gregory, Kami Kim, Jeroen Saeij, Chunlei Su, Michael White, Xing-Quan Zhu, Daniel Howe, B Rosenthal, Michael Grigg, John Parkinson, Liang Liu, Jessica Kissinger, David Roos, and L Sibley. Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes"   Nature Commun. 2016 Jan 7;7:10147. doi: 10.1038/ncomms10147

  • Yi Yan, Brian Adam, Mary Galinski, Jessica C. Kissinger, Alberto Moreno and Juan B. Gutierrez. Mathematical model of within-host interaction between a Plasmodium parasite and the immune system. Mathematical BioSciences, 2015 doi:10.1016/j.mbs.2015.10.003

  • Buscaglia, C.A., Kissinger, J.C. and F. Agüero.  Neglected Tropical Diseases in the Post-Genomic Era. Trends in Genetics, 2015 Oct;31(10):539-55. doi: 10.1016/j.tig.2015.06.002.

  • Yin W, Kissinger JC, Moreno A, Galinski MR, Styczynski MP. From genome-scale data to models of infectious disease: A Bayesian network-based strategy to drive model development. Mathematical Biosciences, 2015 doi: 10.1016/j.mbs.2015.06.006. 

  • Tomasz Blazejewski, Nirvana Nursimulu, Viviana Pszenny, Sriveny Dangoudoubiyam, Sivaranjani Namasivayam, Melissa A. Chiasson, Kyle Chessman, Michelle Tonkin, Swapna Seshadri, Stacy S. Hung, Stacy M. Ricklefs, Martin J. Boulanger, Steve F. Porcella, Joshua Bridgers, Jessica C. Kissinger, Daniel K. Howe, Michael E. Grigg, and John Parkinson. Systems based analysis of the Sarcocystis neurona genome identifies pathways that differentiate tissue-invading from enteric coccidian parasites. MBio 2015 doi: 10.1128/mBio.02445-14

Seminars by Jessica Kissinger

Articles Featuring Jessica Kissinger

Monday, January 26, 2015 - 3:37pm

Genetics scientist was featured in the Columns: