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Chung-Jui Tsai
Winfred N. “Hank” Haynes Professor and Georgia Research Alliance Eminent Scholar
Ph.D. (1995) Michigan Technological University
Phone: 706-542-1271
Email: cjtsai@uga.edu
See my Laboratory Home Page
Research Interests
I am a plant biologist with a special passion for large organisms – trees! Trees are ‘large’ not merely by their physical or genome size, but primarily by their longevity. Longevity depends on a perennial growth habit, which can mean added functionalities for genes, proteins and metabolites compared to herbaceous annuals. The quest for ‘what makes a tree a tree’ has led to various projects ranging from gene family evolution and functional diversification, to transgenic manipulation of traits important to growth and development. We use a variety of experimental approaches in our investigations, ranging from transcriptomics (microarray and RNA-Seq), metabolite profiling (GC-MS and HPLC-MS) and bioinformatics, to the more traditional tools of genetics, biochemistry and plant physiology. Needless to say, our research has industrial relevance due to the importance of forest trees as renewable feedstock. Our work is also of ecological relevance, because many of the traits we investigate are important in tree interactions with herbivores and pathogens. |
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- Tuominen, L.K., V.E. Johnson and C.-J. Tsai. 2011. Differential phylogenetic expansions in BAHD acyltransferases across five angiosperm taxa and evidence of divergent expression among Populusparalogues. BMC Genomics 12: 236.
- Payyavula, R.S., K.H.C. Tay, C.-J. Tsai and S.A. Harding. 2011. The sucrose transporter family in Populus: The importance of a tonoplast PtaSUT4 to bioamss and carbon partitioning. Plant Journal 65: 757-770. DOI: 10.1111/j.1365-313X.2010.04463.x
- Wang, H.Q., L.K. Tuominen and C.-J. Tsai. 2011. SLIM: A sliding linear model for estimating the proportion of true null hypotheses in datasets with dependence structures. Bioinformatics 27: 225-231.
- Wegrzyn, J.L., A.J. Eckert, M. Choi, J.M. Lee, B.J. Stanton, R. Sykes, M.F. Davis, C.-J. Tsai and D.B. Neale. 2010. Association genetics of traits controlling lignin and cellulose biosynthesis in black cottonwood (Populus trichocarpa, Salicaceae) secondary xylem. New Phytologist 188: 515-532.
- Gou, J., S.H. Strauss, C.-J. Tsai, K. Fang, Y. Chen, X. Jiang and V.B. Busov. 2010. Gibberellins regulate lateral root formation in Populus through interaction with auxin and other hormones. Plant Cell 22: 623-639.
- Babst, B.A., S.A. Harding and C.-J. Tsai. 2010. Biosynthesis of phenolic glycosides from phenylpropanoid and benzenoid precursors in Populus. Journal of Chemical Ecology 36: 286-297.
- Payyavula, R.S., B.A. Babst, M.P. Nelsen, S.A. Harding and C.-J. Tsai. 2009. Glycosylation-mediated phenylpropanoid partitioning in Populus tremuloides cell cultures. BMC Plant Biology 9: 151.
- Yuan, Y., J.-D. Chung, X. Fu, V.E. Johnson, P. Ranjan, S.L. Booth, S.A. Harding and C.-J. Tsai. 2009. Alternative splicing and gene duplication differentially shaped the regulation of isochorismate synthase in Populus and Arabidopsis. Proceedings of the National Academy of Sciences USA 106: 22020-22025.
- Harding, S.A., M.M. Jarvie, R.L. Lindroth and C.-J. Tsai. 2009. A comparative analysis of phenylpropanoid metabolism, N utilization, and carbon partitioning in fast- and slow-growing Populus hybrid clones. Journal of Experimental Botany 60: 3443-3452.
- Cseke, L.J., C.-J. Tsai, A. Rogers, M.P. Nelsen, H.L. White, D.F. Karnosky and G.K. Podila. 2009. Transcriptomic comparison in the leaves of two aspen genotypes having similar carbon assimilation rates but different partitioning patterns under elevated [CO2]. New Phytologist 182: 891-911.
- Qin, H., T. Feng, S.A. Harding, C.-J. Tsai and S. Zhang. 2008. An efficient method to identify differentially expressed genes in microarray experiments. Bioinformatics 24: 1583-1589.
- Luo, K, S.A. Harding and C.-J. Tsai. 2008. A modified T-vector for simplified assembly of hairpin RNAi constructs. Biotechnology Letters 30: 1271-1274.
- Oakley, R.V., Y.-S Wang, W. Ramakrishna, S.A. Harding and C.-J. Tsai. 2007. Differential expansion and expression of alpha- and beta-tubulin gene families in Populus. Plant Physiology 145: 961-973.
- Rajinikanth, M., Harding S.A. and C.-J. Tsai. 2007. The glycine decarboxylase complex multienzyme family in Populus. Journal of Experimental Botany 58: 1761-1770.
- Brodeur-Campbell, S.E., Vucetich J.A., Richter D.L., Waite T.A., Rosemier J.N. and C.-J. Tsai. 2006. Insect herbivory on low-lignin transgenic aspen. Environmental Entomology 35: 1696-1701.
- Tuskan, G.A. et al. (110 authors). 2006. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313: 1596-1604.
- Tsai, C.-J., Harding S.A., Tschaplinski T.J., Lindroth R.L. and Y. Yuan. 2006. Genome-wide analysis of the structural genes regulating defense phenylpropanoid metabolism in Populus. New Phytologist 172: 47-62.
- Harding S.A., Jiang H., Jeong M.L., Casado F.L., Lin H.-W. and C.-J. Tsai. 2005. Functional genomics analysis of foliar condensed tannin and phenolic glycoside regulation in natural cottonwood hybrids. Tree Physiology 25: 1475-1486.
- Jeong, M.L., Jiang H., Chen H.-S., Tsai C.-J. and S.A. Harding. 2004. Metabolic profiling the sink to source transition in developing leaves of quaking aspen (Populus tremuloides). Plant Physiology 136: 3364-3375.
- Ranjan, P., Kao Y.-Y., Jiang H., Joshi C.P., Harding S.A. and C.-J. Tsai. 2004. Suppression subtractive hybridization-mediated transcriptome analysis from multiple tissues of aspen (Populus tremuloides) trees altered in phenylpropanoid metabolism. Planta 219: 694-704.
- Kao, Y.-Y., Harding S.A. and C.-J. Tsai. 2002. Differential expression of two distinct phenylalanine ammonia-lyase genes in condensed tannin-accumulating and lignifying cells of quaking aspen. Plant Physiology 130: 796-807.
- Harding, S.A., Leshkevich J., Chiang V.L. and C.-J. Tsai. 2002. Differential substrate inhibition couples kinetically distinct 4-coumarate:CoA ligases with spatially distinct metabolic roles in quaking aspen. Plant Physiology 128: 428-438.
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