Ellen Neidle
Professor of Microbiology
Ph.D. (1987) Yale University
Phone: 706-542-2852
Email: eneidle@uga.edu
See my Laboratory Home Page

Research Interests
Our laboratory research focuses on the degradation of aromatic compounds, such as benzoate, by the soil bacterium Acinetobacter sp. strain ADP1. Aromatic compounds are prevalent in the environment both as the result of natural processes, such as lignin degradation, and as pollutants that pose significant health and ecological hazards. We hope that a better understanding of the factors regulating aromatic compound catabolism will contribute to the development of microbe-based treatments for pollution (bioremediation). Combinations of biochemical and genetic approaches are currently being used to study the enzymes and genes involved in the conversion of benzoate to tricarboxylic acid cycle intermediates. Gene regulation, enzyme function, and transport mechanisms are all topics of investigation.
  • Reams, A.B. and E.L. Neidle. 2004. Gene amplification involves site-specific short homology-independent illegitimate recombination in Acinetobacter sp. strain ADP1. Journal of Molecular Biology 338: 643-656.
  • Buchan, A., Neidle, E.L. and M.A. Moran. 2004. Diverse organization of genes of the beta-ketoadipate pathway in members of the marine Roseobacter lineage. Applied and Environmental Microbiology 70: 1658-1668.
  • Clark, T.J., Phillips, R.S., Bundy, B.M., Momany, C. and E.L. Neidle. 2004. Benzoate decreases the binding of cis,cis-muconate to the BenM regulator despite the synergistic effect of both compounds on transcriptional activation. Journal of Bacteriology 186: 1200-1204.
  • Clark, T., Haddad S., Neidle E.L. and C. Momany. 2004. Crystallization of the effector-binding domains of BenM and CatM, LysR-type transcriptional regulators from Acinetobacter sp. ADP1. Acta Crystallographica. Section D, Biological Crystallography 60: 105-108.
  • Reams, A.B. and E.L. Neidle. 2004. Selection for gene clustering by tandem duplication., Annual Review of Microbiology 58: 119-142.
  • Beharry, Z.M., Eby, D.M., Coulter, E.D., Viswanathan, R., Neidle, E.L., Phillips, R.S. and D.M. Kurtz. 2003. Histidine ligand protonation and redox potential in the Rieske dioxygenases: role of a conserved aspartate in anthranilate 1,2-dioxygenase. Biochemistry 42: 13625-13636.
  • Reams, A.B. and E.L. Neidle. 2003. Genome plasticity in Acinetobacter: new degradative capabilities acquired by the spontaneous amplification of large chromosomal segments, Molecular Microbiology, 47: 1291-304.
  • Brzostowicz, P.C., Reams, A.B., Clark, T.J. and E.L. Neidle. 2003. Transcriptional cross-regulation of the catechol and protocatechuate branches of the beta-ketoadipate pathway contributes to carbon source-dependent expression of the Acinetobacter sp. strain ADP1. Applied and Environmental Microbiology 69: 1598-1606.
  • Cosper, N.J., Eby, D.M., Kounosu, A., Kurosawa, N., Neidle, E.L., Kurtz, D.M., Iwasaki, T. and R.A. Scott. 2002. Redox-dependent structural changes in archaeal and bacterial Rieske-type [2Fe-2S] clusters. Protein Science 11: 2969-2973.
  • Bundy, B.M., Collier, L.S., Hoover T.R. and E.L. Neidle. 2002. Synergistic transcriptional activation by one regulatory protein in response to two metabolites. Proc. Natl. Acad. Sci. USA 99: 7693-7698.
  • Karlsson, A., Beharry, Z.M., Matthew, E.D., Coulter, E.D., Neidle, E.L., Kurtz, D.M., Eklund, H. and S. Ramaswamy. 2002. X-ray crystal structure of benzoate 1,2-dioxygenase reductase from Acinetobacter sp. strain ADP1. Journal of Molecular Biology 318: 261-272.
  • Clark, T.J., Momany, C. and E.L. Neidle. 2002. The benPK operon, proposed to play a role in transport, is part of a regulon for benzoate catabolism in Acinetobacter sp. strain ADP1, Microbiology 148: 1213-1223.
  • Buchan A., Neidle, E.L. and M.A. Moran. 2001. Diversity of the ring-cleaving dioxygenase gene pcaH in a salt marsh bacterial community. Applied and Environmental Microbiology 67: 5801-5809.
  • Haddad, S., Eby, D.M. and E.L. Neidle. 2001. Cloning and expression of the benzoate dioxygenase genes from Rhodococcus sp. strain 19070. Applied and Environmental Microbiology 67: 2507-2514.
  • Eby, D.M., Beharry, Z.M., Coulter, E.D., Kurtz, D.M. and E.L. Neidle. 2001. Characterization and evolution of anthranilate 1,2-dioxygenase from Acinetobacter sp. strain ADP1, Journal of Bacteriology 183: 109-118.
  • Cosper N.J., Collier, L.S., Clark, T.J., Scott, R.A. and E.L. Neidle. 2000. Mutations in catB, the gene encoding muconate cycloisomerase, activate transcription of the distal ben genes and contribute to a complex regulatory circuit in Acinetobacter sp. strain ADP1. Journal of Bacteriology 182: 7044-7052.
  • Buchan, A., Collier, L.S., Neidle, E.L. and M.A. Moran. 2000. Key aromatic-ring-cleaving enzyme, protocatechuate 3,4-dioxygenase, in the ecologically important marine Roseobacter lineage. Applied and Environmental Microbiology 66: 4662-4672.
  • “Regulation of Aromatic Compound Degradation in Acinetobacter,” NSF
  • “REU Site: Research in Prokaryotic Biology” NSF